Index A | B | C | D | E | F | G | I | J | K | L | M | O | P | R | S | T | U | V | W A append_masks() (in module conpagnon.utils.array_operation) append_pdf() (in module conpagnon.utils.folders_and_files_management) array_rebuilder() (in module conpagnon.utils.array_operation) Atlas (class in conpagnon.data_handling.atlas) B bootstrap_classification() (in module conpagnon.machine_learning.features_indentification) bootstrap_svc() (in module conpagnon.machine_learning.features_indentification) bootstrap_svc_() (in module conpagnon.machine_learning.features_indentification) C check_2d() (in module conpagnon.utils.array_operation) check_directories_existence() (in module conpagnon.utils.folders_and_files_management) closest_colour() (in module conpagnon.data_handling.atlas) compute_summary_subjects_summary_values() (in module conpagnon.machine_learning.CPM_method) compute_weight_distribution() (in module conpagnon.machine_learning.features_indentification) concatenate_dataframes() (in module conpagnon.data_handling.data_management) concatenate_imgs_in_order() (in module conpagnon.utils.array_operation) conpagnon module conpagnon.computing module conpagnon.computing.compute_connectivity_matrices module conpagnon.connectivity_statistics module conpagnon.connectivity_statistics.parametric_tests module conpagnon.connectivity_statistics.regression_analysis_model module conpagnon.data_handling module conpagnon.data_handling.atlas module conpagnon.data_handling.data_architecture module conpagnon.data_handling.data_management module conpagnon.data_handling.dictionary_operations module conpagnon.machine_learning module conpagnon.machine_learning.classification module conpagnon.machine_learning.CPM_method module conpagnon.machine_learning.cpm_predict_behavior module conpagnon.machine_learning.features_indentification module conpagnon.machine_learning.scores_predictions module conpagnon.plotting module conpagnon.plotting.display module conpagnon.sphinx module conpagnon.sphinx.conf module conpagnon.utils module conpagnon.utils.array_operation module conpagnon.utils.folders_and_files_management module conpagnon.utils.pre_preprocessing module create_connectivity_mask() (in module conpagnon.computing.compute_connectivity_matrices) create_directory() (in module conpagnon.utils.folders_and_files_management) create_group_dictionnary() (in module conpagnon.data_handling.data_architecture) csv_from_dictionary() (in module conpagnon.data_handling.data_management) csv_from_intra_network_dictionary() (in module conpagnon.data_handling.data_management) D dataframe_to_csv() (in module conpagnon.data_handling.data_management) design_matrix_builder() (in module conpagnon.connectivity_statistics.parametric_tests) dictionary_to_csv() (in module conpagnon.data_handling.data_management) discriminative_brain_connection_identification() (in module conpagnon.machine_learning.features_indentification) display_gaussian_connectivity_fit() (in module conpagnon.plotting.display) distribution_estimation_mean_subjects_connectivity() (in module conpagnon.connectivity_statistics.parametric_tests) E extract_sub_connectivity_matrices() (in module conpagnon.computing.compute_connectivity_matrices) F features_weights_max_t_correction() (in module conpagnon.machine_learning.features_indentification) features_weights_parametric_correction() (in module conpagnon.machine_learning.features_indentification) fetch_atlas() (conpagnon.data_handling.atlas.Atlas method), [1] (in module conpagnon.data_handling.atlas) fetch_atlas_functional_network() (in module conpagnon.data_handling.atlas) fetch_data() (in module conpagnon.data_handling.data_architecture) fetch_data_with_individual_atlases() (in module conpagnon.data_handling.data_architecture) fetch_fmri_data() (in module conpagnon.data_handling.data_architecture) find_significant_features_indices() (in module conpagnon.machine_learning.features_indentification) find_top_features() (in module conpagnon.machine_learning.features_indentification) fisher_transform() (in module conpagnon.utils.pre_preprocessing) fit_model_on_training_set() (in module conpagnon.machine_learning.CPM_method) flatten() (in module conpagnon.data_handling.data_management) functional_connectivity_distribution_estimation() (in module conpagnon.connectivity_statistics.parametric_tests) G generate_3d_img_network() (in module conpagnon.data_handling.atlas) get_center_of_mass() (conpagnon.data_handling.atlas.Atlas method) get_colour_name() (in module conpagnon.data_handling.atlas) get_region_numbers() (conpagnon.data_handling.atlas.Atlas method) GetCenterOfMass() (conpagnon.data_handling.atlas.Atlas method) GetLabels() (conpagnon.data_handling.atlas.Atlas method), [1] GetRegionNumbers() (conpagnon.data_handling.atlas.Atlas method) group_by_factors() (in module conpagnon.data_handling.data_management) group_mean_connectivity() (in module conpagnon.computing.compute_connectivity_matrices) groupby_factor_connectivity_matrices() (in module conpagnon.data_handling.dictionary_operations) I individual_connectivity_matrices() (in module conpagnon.computing.compute_connectivity_matrices) inter_network_subjects_connectivity_matrices() (in module conpagnon.computing.compute_connectivity_matrices) inter_network_two_sample_t_test() (in module conpagnon.connectivity_statistics.parametric_tests) intra_network_functional_connectivity() (in module conpagnon.computing.compute_connectivity_matrices) intra_network_two_samples_t_test() (in module conpagnon.connectivity_statistics.parametric_tests) J joint_models_correction() (in module conpagnon.connectivity_statistics.regression_analysis_model) K k_largest_index_argsort() (in module conpagnon.machine_learning.features_indentification) k_smallest_index_argsort() (in module conpagnon.machine_learning.features_indentification) L linear_regression() (in module conpagnon.connectivity_statistics.parametric_tests) list_fmri_data() (in module conpagnon.data_handling.data_architecture) load_atlas() (conpagnon.data_handling.atlas.Atlas method) load_object() (in module conpagnon.utils.folders_and_files_management) loadAtlas() (conpagnon.data_handling.atlas.Atlas method) M mask_array_std() (in module conpagnon.utils.array_operation) masked_arrays_mean() (in module conpagnon.utils.array_operation) masked_void_rois_connectivity_matrix() (in module conpagnon.utils.array_operation) mean_functional_connectivity_distribution_estimation() (in module conpagnon.connectivity_statistics.parametric_tests) mean_of_flatten_connectivity_matrices() (in module conpagnon.computing.compute_connectivity_matrices) merge_by_index() (in module conpagnon.data_handling.data_management) merge_dictionary() (in module conpagnon.data_handling.dictionary_operations) merge_list_dataframes() (in module conpagnon.data_handling.data_management) merge_pdfs() (in module conpagnon.utils.folders_and_files_management) module conpagnon conpagnon.computing conpagnon.computing.compute_connectivity_matrices conpagnon.connectivity_statistics conpagnon.connectivity_statistics.parametric_tests conpagnon.connectivity_statistics.regression_analysis_model conpagnon.data_handling conpagnon.data_handling.atlas conpagnon.data_handling.data_architecture conpagnon.data_handling.data_management conpagnon.data_handling.dictionary_operations conpagnon.machine_learning conpagnon.machine_learning.classification conpagnon.machine_learning.CPM_method conpagnon.machine_learning.cpm_predict_behavior conpagnon.machine_learning.features_indentification conpagnon.machine_learning.scores_predictions conpagnon.plotting conpagnon.plotting.display conpagnon.sphinx conpagnon.sphinx.conf conpagnon.utils conpagnon.utils.array_operation conpagnon.utils.folders_and_files_management conpagnon.utils.pre_preprocessing O ols_regression() (in module conpagnon.connectivity_statistics.parametric_tests) ols_regression_formula() (in module conpagnon.connectivity_statistics.parametric_tests) one_against_all_bootstrap() (in module conpagnon.machine_learning.features_indentification) one_against_all_classification() (in module conpagnon.machine_learning.features_indentification) one_against_all_permutation_bootstrap() (in module conpagnon.machine_learning.features_indentification) one_way_anova() (in module conpagnon.connectivity_statistics.regression_analysis_model) one_way_anova_network() (in module conpagnon.connectivity_statistics.regression_analysis_model) P partial_corr() (in module conpagnon.connectivity_statistics.parametric_tests) permutation_bootstrap_svc() (in module conpagnon.machine_learning.features_indentification) plot_matrix() (in module conpagnon.plotting.display) plot_ttest_results() (in module conpagnon.plotting.display) pooled_groups_connectivity() (in module conpagnon.computing.compute_connectivity_matrices) pooled_groups_tangent_mean() (in module conpagnon.computing.compute_connectivity_matrices) predict_behavior() (in module conpagnon.machine_learning.CPM_method) (in module conpagnon.machine_learning.cpm_predict_behavior) predict_scores() (in module conpagnon.machine_learning.scores_predictions) predictor_selection_pcorrelation() (in module conpagnon.machine_learning.CPM_method) predictors_selection_correlation() (in module conpagnon.machine_learning.CPM_method) predictors_selection_linear_model() (in module conpagnon.machine_learning.CPM_method) R random_draw_of_connectivity_matrices() (in module conpagnon.data_handling.dictionary_operations) rank_top_features_weight() (in module conpagnon.machine_learning.features_indentification) read_csv() (in module conpagnon.data_handling.data_management) read_excel_file() (in module conpagnon.data_handling.data_management) read_text_data_file() (in module conpagnon.data_handling.data_architecture) rebuild_subject_connectivity_matrices() (in module conpagnon.data_handling.dictionary_operations) regress_confounds() (in module conpagnon.connectivity_statistics.parametric_tests) regression_analysis_internetwork_level() (in module conpagnon.connectivity_statistics.regression_analysis_model) regression_analysis_network_level() (in module conpagnon.connectivity_statistics.regression_analysis_model) regression_analysis_network_level_v2() (in module conpagnon.connectivity_statistics.regression_analysis_model) regression_analysis_whole_brain() (in module conpagnon.connectivity_statistics.regression_analysis_model) regression_analysis_whole_brain_v2() (in module conpagnon.connectivity_statistics.regression_analysis_model) remove_duplicate() (in module conpagnon.data_handling.data_management) remove_empty_directories() (in module conpagnon.utils.folders_and_files_management) remove_reversed_duplicates() (in module conpagnon.machine_learning.features_indentification) S save_object() (in module conpagnon.utils.folders_and_files_management) seaborn_scatterplot() (in module conpagnon.plotting.display) shift_index_column() (in module conpagnon.data_handling.data_management) stack_subjects_connectivity_matrices() (in module conpagnon.data_handling.dictionary_operations) stacked_connectivity_matrices() (in module conpagnon.utils.pre_preprocessing) subjects_mean_connectivity_() (in module conpagnon.computing.compute_connectivity_matrices) T t_and_p_values_barplot() (in module conpagnon.plotting.display) tangent_space_projection() (in module conpagnon.computing.compute_connectivity_matrices) time_series_extraction() (in module conpagnon.computing.compute_connectivity_matrices) time_series_extraction_with_individual_atlases() (in module conpagnon.computing.compute_connectivity_matrices) timer() (in module conpagnon.machine_learning.features_indentification) truncate() (in module conpagnon.utils.array_operation) two_groups_classification() (in module conpagnon.machine_learning.classification) two_sample_t_test_() (in module conpagnon.connectivity_statistics.parametric_tests) two_sample_t_test_on_mean_connectivity() (in module conpagnon.connectivity_statistics.parametric_tests) two_samples_t_test() (in module conpagnon.connectivity_statistics.parametric_tests) U unflatten() (in module conpagnon.data_handling.data_management) user_labels_colors() (conpagnon.data_handling.atlas.Atlas method) UserLabelsColors() (conpagnon.data_handling.atlas.Atlas method) V vcorrcoef() (in module conpagnon.machine_learning.scores_predictions) vec_to_matrix_boolean_mask() (in module conpagnon.utils.array_operation) vectorize_boolean_mask() (in module conpagnon.utils.array_operation) vectorizer() (in module conpagnon.utils.array_operation) W write_ols_results() (in module conpagnon.data_handling.data_management) write_raw_data() (in module conpagnon.connectivity_statistics.regression_analysis_model) write_raw_data_network() (in module conpagnon.connectivity_statistics.regression_analysis_model)